PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 339aa    MW: 39415.5 Da    PI: 7.1174
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033560.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-12443141
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                     rg W + Ede+l ++v+++G+++W++Ia++++ gR++k ++
      Pbr033560.1  4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSEKRVV 43
                     899*****************************.***99876 PP

2Myb_DNA-binding32.52e-101411671846
                      HTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  18 qlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +G++ W+ Iar ++ gRt++ +k++w+ 
      Pbr033560.1 141 IHGNR-WAVIARLFP-GRTDNAVKNHWHV 167
                      7****.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.08154IPR017930Myb domain
SMARTSM007178.9E-7352IPR001005SANT/Myb domain
SuperFamilySSF466893.23E-9343IPR009057Homeodomain-like
PfamPF002496.1E-12443IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-23538IPR009057Homeodomain-like
CDDcd001671.70E-9744No hitNo description
SuperFamilySSF466891.8E-126998IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-1580166IPR009057Homeodomain-like
PROSITE profilePS5129410.3495173IPR017930Myb domain
SMARTSM007170.001799171IPR001005SANT/Myb domain
CDDcd001671.92E-5140166No hitNo description
SuperFamilySSF466891.8E-12141169IPR009057Homeodomain-like
PfamPF002491.8E-7141166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MCTRGHWRPA EDEKLRELVE RYGPHNWNAI AEKLQGRSEK RVVNGLGLVY STLEGKEGYH  60
LIERCFCNII TYMNNIYELN DAGKSCRLRW FNQLDPRINR NPFTEEEEEX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXR IHGNRWAVIA RLFPGRTDNA VKNHWHVIMA RRCRERSRLN  180
HSKLIRNTST AQTSFMSIIT NNNEPKSSSK QDHPLQINCD IGTWNLDSYN YIGKYYSCSD  240
RNYHQYRPAF THSPPPPFPK EFYPNTCSAT MHQDHNKDQP IEFYDFLQVN TESNGSEVID  300
NARKEEEEVD QEGTGQQKSN VAGLPFIDFL AVNTGISS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295925e-42KP229592.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB36) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341782.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A0H4CRL41e-93A0A0H4CRL4_BETPL; MYB transcription factor 3
STRINGPOPTR_0015s05130.15e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-64myb domain protein 52